Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00232.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3948
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31


Found at i:1553 original size:8 final size:8

Alignment explanation


    Indices: 1540--1589  Score: 54
    Period size: 8  Copynumber: 6.6  Consensus size: 8

       1530 GAAGCTACTG

                    
       1540 ATTAATTT
          1 ATTAATTT

                    
       1548 ATTAATTT
          1 ATTAATTT

            *        
       1556 TTTCAATTT
          1 ATT-AATTT

                    
       1565 -TT--TTT
          1 ATTAATTT

                    
       1570 ATTAATTT
          1 ATTAATTT

                    
       1578 ATTAATTT
          1 ATTAATTT

                 
       1586 -TTAA
          1 ATTAA

       1590 ATTTGGTTGA


Statistics
Matches: 37,  Mismatches: 1, Indels: 9
        0.79            0.02        0.19

Matches are distributed among these distances:
   5    3  0.08
   6    2  0.05
   7    4  0.11
   8   23  0.62
   9    5  0.14

ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66


Consensus pattern (8 bp):   
ATTAATTT

Found at i:1573 original size:22 final size:21

Alignment explanation


    Indices: 1545--1587  Score: 68
    Period size: 22  Copynumber: 2.0  Consensus size: 21

       1535 TACTGATTAA

                       *          
       1545 TTTATTAATTTTTTCAATTTTT
          1 TTTATTAATTTATT-AATTTTT

                                 
       1567 TTTATTAATTTATTAATTTTT
          1 TTTATTAATTTATTAATTTTT

       1588 AAATTTGGTT


Statistics
Matches: 20,  Mismatches: 1, Indels: 1
        0.91            0.05        0.05

Matches are distributed among these distances:
  21    7  0.35
  22   13  0.65

ACGTcount: A:0.26, C:0.02, G:0.00, T:0.72


Consensus pattern (21 bp):   
TTTATTAATTTATTAATTTTT
Done.