Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00238.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 957

Length: 1596
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.28


Found at i:12 original size:6 final size:6

Alignment explanation


    Indices: 2--37  Score: 72
    Period size: 6  Copynumber: 6.0  Consensus size: 6

          1 A

                                                     
          2 CCAAAT CCAAAT CCAAAT CCAAAT CCAAAT CCAAAT
          1 CCAAAT CCAAAT CCAAAT CCAAAT CCAAAT CCAAAT

         38 GGACGATTCT


Statistics
Matches: 30,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   30  1.00

ACGTcount: A:0.50, C:0.33, G:0.00, T:0.17


Consensus pattern (6 bp):   
CCAAAT

Found at i:120 original size:16 final size:15

Alignment explanation


    Indices: 99--130  Score: 55
    Period size: 16  Copynumber: 2.1  Consensus size: 15

         89 TGTCTTCATT

                            
         99 GCATTGTTCTTCTTCA
          1 GCATTGTTCTT-TTCA

                           
        115 GCATTGTTCTTTTCA
          1 GCATTGTTCTTTTCA

             
        130 G
          1 G

        131 TAAACGCACG


Statistics
Matches: 16,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  15    5  0.31
  16   11  0.69

ACGTcount: A:0.12, C:0.22, G:0.16, T:0.50


Consensus pattern (15 bp):   
GCATTGTTCTTTTCA
Done.