Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01786.M1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5536
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.31


Found at i:5434 original size:16 final size:16

Alignment explanation


    Indices: 5406--5443  Score: 58
    Period size: 16  Copynumber: 2.4  Consensus size: 16

       5396 ACAATAAAAC

                  *         
       5406 TGTAATTAAATAGAAT
          1 TGTAATGAAATAGAAT

                          * 
       5422 TGTAATGAAATAGAGT
          1 TGTAATGAAATAGAAT

                  
       5438 TGTAAT
          1 TGTAAT

       5444 CAGTAATTTA


Statistics
Matches: 20,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  16   20  1.00

ACGTcount: A:0.45, C:0.00, G:0.18, T:0.37


Consensus pattern (16 bp):   
TGTAATGAAATAGAAT
Done.