Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00245.F9

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3972
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30


Found at i:3833 original size:53 final size:53

Alignment explanation


    Indices: 3753--3858  Score: 194
    Period size: 53  Copynumber: 2.0  Consensus size: 53

       3743 AAAAGTAAGG

                 *                                               
       3753 TTAACTCCTCCCTTTTGAGTTTCTTGATTCGAATGATAATTTGGATGGCATTA
          1 TTAACCCCTCCCTTTTGAGTTTCTTGATTCGAATGATAATTTGGATGGCATTA

                                            *                    
       3806 TTAACCCCTCCCTTTTGAGTTTCTTGATTCGAGTGATAATTTGGATGGCATTA
          1 TTAACCCCTCCCTTTTGAGTTTCTTGATTCGAATGATAATTTGGATGGCATTA

       3859 CACTTTTCTT


Statistics
Matches: 51,  Mismatches: 2, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  53   51  1.00

ACGTcount: A:0.22, C:0.18, G:0.18, T:0.42


Consensus pattern (53 bp):   
TTAACCCCTCCCTTTTGAGTTTCTTGATTCGAATGATAATTTGGATGGCATTA
Done.