Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00269.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3592
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.31


Found at i:1564 original size:42 final size:42

Alignment explanation


    Indices: 1512--1595  Score: 123
    Period size: 42  Copynumber: 2.0  Consensus size: 42

       1502 TTCCTCCAGA

                        *        *   *                
       1512 ACCTCCTGCCCCGATTAGAGCTAGTTCTCCTCCACCACCACC
          1 ACCTCCTGCCCCAATTAGAGCCAGTCCTCCTCCACCACCACC

                *                          *          
       1554 ACCTGCTGCCCCAATTAGAGCCAGTCCTCCTGCACCACCACC
          1 ACCTCCTGCCCCAATTAGAGCCAGTCCTCCTCCACCACCACC

       1596 CTCTATGAAA


Statistics
Matches: 37,  Mismatches: 5, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  42   37  1.00

ACGTcount: A:0.20, C:0.48, G:0.13, T:0.19


Consensus pattern (42 bp):   
ACCTCCTGCCCCAATTAGAGCCAGTCCTCCTCCACCACCACC

Done.