Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00271.C1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3206
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34


Found at i:1091 original size:72 final size:72

Alignment explanation


    Indices: 820--1112  Score: 394
    Period size: 72  Copynumber: 4.1  Consensus size: 72

        810 AATAACATTG

                         *                             *                *    
        820 GTGGTCCAATACCCGATTCCATTTTTGATCTTGTGAACCTTATTTCACTTGATTTGTCATTAAAC
          1 GTGGTCCAATACCAGATTCCATTTTTGATCTTGTGAACCTTATCTCACTTGATTTGTCATCAAAC

                   
        885 AACTTGA
         66 AACTTGA

                         * *  *                                *             
        892 GTGGTCCAATACCGGCTTTCATTTTTGATCTTGTGAACCTTAAT-TCACTTTATTTGTCATCAAA
          1 GTGGTCCAATACCAGATTCCATTTTTGATCTTGTGAACCTT-ATCTCACTTGATTTGTCATCAAA

            *  *    
        956 TAAGTTGA
         65 CAACTTGA

                              *  *  *                                        
        964 GTGGTCCAATACCAGATTTCAGTTGTGATCTTGTGAACCTTA-CTTCACTTGATTTGTCATCAAA
          1 GTGGTCCAATACCAGATTCCATTTTTGATCTTGTGAACCTTATC-TCACTTGATTTGTCATCAAA

                    
       1028 CAACTTGA
         65 CAACTTGA

                                      *           *      *     *             
       1036 GTGGTCCAATACCAGATTCCATTTTTCATCTTGTGAACATT-TCTGATCTTTATTTGTCATCAAA
          1 GTGGTCCAATACCAGATTCCATTTTTGATCTTGTGAACCTTATCTCA-CTTGATTTGTCATCAAA

                    
       1100 CAACTTGA
         65 CAACTTGA

                 
       1108 GTGGT
          1 GTGGT

       1113 GTGATCAAGT


Statistics
Matches: 195,  Mismatches: 21, Indels: 10
        0.86            0.09        0.04

Matches are distributed among these distances:
  71    3  0.02
  72  190  0.97
  73    2  0.01

ACGTcount: A:0.25, C:0.20, G:0.15, T:0.40


Consensus pattern (72 bp):   
GTGGTCCAATACCAGATTCCATTTTTGATCTTGTGAACCTTATCTCACTTGATTTGTCATCAAAC
AACTTGA
Done.