Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00274.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3601
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.35


Found at i:1481 original size:72 final size:72

Alignment explanation


    Indices: 1408--1675  Score: 405
    Period size: 72  Copynumber: 3.7  Consensus size: 72

       1398 ATTCCATTTT

                             *                                            ** 
       1408 TGATCTTGTGAACCTTATTTCACTTGATTTGTCATCAAACAACTTGAGTGGTCCAATACC-GGGT
          1 TGATCTTGTGAACCTTACTTCACTTGATTTGTCATCAAACAACTTGAGTGGTCCAATACCAGATT

                *  *
       1472 TCTATTTT
         66 TC-AATTG

                                      *             *  *            * *      
       1480 TGATCTTGTGAACCTT-CATTCACTTAATTTGTCATCAAATAAGTTGAGTGGTCCATTGCCAGAT
          1 TGATCTTGTGAACCTTAC-TTCACTTGATTTGTCATCAAACAACTTGAGTGGTCCAATACCAGAT

                    
       1544 TTCAATTG
         65 TTCAATTG

                                                                             
       1552 TGATCTTGTGAACCTTACTTCACTTGATTTGTCATCAAACAACTTGAGTGGTCCAATACCAGATT
          1 TGATCTTGTGAACCTTACTTCACTTGATTTGTCATCAAACAACTTGAGTGGTCCAATACCAGATT

                   
       1617 TCAATTG
         66 TCAATTG

                       *                                        
       1624 TGATCTTGTGAGCCTTACTTCACTTGATTTGTCATCAAACAACTTGAGTGGT
          1 TGATCTTGTGAACCTTACTTCACTTGATTTGTCATCAAACAACTTGAGTGGT

       1676 GTGATCAAGT


Statistics
Matches: 177,  Mismatches: 16, Indels: 6
        0.89            0.08        0.03

Matches are distributed among these distances:
  72  172  0.97
  73    5  0.03

ACGTcount: A:0.25, C:0.19, G:0.17, T:0.38


Consensus pattern (72 bp):   
TGATCTTGTGAACCTTACTTCACTTGATTTGTCATCAAACAACTTGAGTGGTCCAATACCAGATT
TCAATTG

Done.