Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00276.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3310
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.32


Found at i:3025 original size:88 final size:88

Alignment explanation


    Indices: 2876--3050  Score: 350
    Period size: 88  Copynumber: 2.0  Consensus size: 88

       2866 CCGAACTTGA

                                                                             
       2876 TTCTTCGATTACAAGTAATCCATGAACTGGAAGACCAAGCTGTATATCAACATATTCCAATAGTG
          1 TTCTTCGATTACAAGTAATCCATGAACTGGAAGACCAAGCTGTATATCAACATATTCCAATAGTG

                                   
       2941 CACTCACCACACAACTAGTGAAG
         66 CACTCACCACACAACTAGTGAAG

                                                                             
       2964 TTCTTCGATTACAAGTAATCCATGAACTGGAAGACCAAGCTGTATATCAACATATTCCAATAGTG
          1 TTCTTCGATTACAAGTAATCCATGAACTGGAAGACCAAGCTGTATATCAACATATTCCAATAGTG

                                  
       3029 CACTCACCACACAACTAGTGAA
         66 CACTCACCACACAACTAGTGAA

       3051 ATGTATGTCT


Statistics
Matches: 87,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  88   87  1.00

ACGTcount: A:0.37, C:0.24, G:0.14, T:0.25


Consensus pattern (88 bp):   
TTCTTCGATTACAAGTAATCCATGAACTGGAAGACCAAGCTGTATATCAACATATTCCAATAGTG
CACTCACCACACAACTAGTGAAG
Done.