Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00293.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 642

Length: 1070
ACGTcount: A:0.31, C:0.12, G:0.24, T:0.33


Found at i:824 original size:186 final size:186

Alignment explanation


    Indices: 510--889  Score: 760
    Period size: 186  Copynumber: 2.0  Consensus size: 186

        500 GAGAAAAAGA

                                                                             
        510 TATAAGTGACTCGTGAAAGTAGAGAACAACTTTTTCTGGTAAGATTTTCGGGGACGAAAATCCCT
          1 TATAAGTGACTCGTGAAAGTAGAGAACAACTTTTTCTGGTAAGATTTTCGGGGACGAAAATCCCT

                                                                             
        575 AAAGGGGGGAAGAAATGTAATAGCCCGATTTTGGGCCTAGTCGGAACAGTGGTTTCGGGACCACT
         66 AAAGGGGGGAAGAAATGTAATAGCCCGATTTTGGGCCTAGTCGGAACAGTGGTTTCGGGACCACT

                                                                    
        640 ATTCTGAGGCCAGAGAAAATTATTTTAGTATTATTTTATGTGTTATAATATGATTT
        131 ATTCTGAGGCCAGAGAAAATTATTTTAGTATTATTTTATGTGTTATAATATGATTT

                                                                             
        696 TATAAGTGACTCGTGAAAGTAGAGAACAACTTTTTCTGGTAAGATTTTCGGGGACGAAAATCCCT
          1 TATAAGTGACTCGTGAAAGTAGAGAACAACTTTTTCTGGTAAGATTTTCGGGGACGAAAATCCCT

                                                                             
        761 AAAGGGGGGAAGAAATGTAATAGCCCGATTTTGGGCCTAGTCGGAACAGTGGTTTCGGGACCACT
         66 AAAGGGGGGAAGAAATGTAATAGCCCGATTTTGGGCCTAGTCGGAACAGTGGTTTCGGGACCACT

                                                                    
        826 ATTCTGAGGCCAGAGAAAATTATTTTAGTATTATTTTATGTGTTATAATATGATTT
        131 ATTCTGAGGCCAGAGAAAATTATTTTAGTATTATTTTATGTGTTATAATATGATTT

                    
        882 TATAAGTG
          1 TATAAGTG

        890 CATGTTAATT


Statistics
Matches: 194,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
 186  194  1.00

ACGTcount: A:0.31, C:0.13, G:0.25, T:0.32


Consensus pattern (186 bp):   
TATAAGTGACTCGTGAAAGTAGAGAACAACTTTTTCTGGTAAGATTTTCGGGGACGAAAATCCCT
AAAGGGGGGAAGAAATGTAATAGCCCGATTTTGGGCCTAGTCGGAACAGTGGTTTCGGGACCACT
ATTCTGAGGCCAGAGAAAATTATTTTAGTATTATTTTATGTGTTATAATATGATTT
Done.