Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00305.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1841
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34


Found at i:1468 original size:6 final size:6

Alignment explanation


    Indices: 1410--1465  Score: 103
    Period size: 6  Copynumber: 9.3  Consensus size: 6

       1400 GAGTTTATGG

                                                                   
       1410 ATATAC ATATAC ATATAC ATATAC ATATAC ATATAC ATATAC ATATAC
          1 ATATAC ATATAC ATATAC ATATAC ATATAC ATATAC ATATAC ATATAC

              *      
       1458 ATGTAC AT
          1 ATATAC AT

       1466 GTATAACTTG


Statistics
Matches: 49,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
   6   49  1.00

ACGTcount: A:0.48, C:0.16, G:0.02, T:0.34


Consensus pattern (6 bp):   
ATATAC
Done.