Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00314.M1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5847
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.30


Found at i:4304 original size:16 final size:16

Alignment explanation


    Indices: 4283--4314  Score: 55
    Period size: 16  Copynumber: 2.0  Consensus size: 16

       4273 TGTGTATGTT

                     *      
       4283 GATTTTTTTTTATTTA
          1 GATTTTTTTGTATTTA

                            
       4299 GATTTTTTTGTATTTA
          1 GATTTTTTTGTATTTA

       4315 AAGGGTTTGC


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  16   15  1.00

ACGTcount: A:0.19, C:0.00, G:0.09, T:0.72


Consensus pattern (16 bp):   
GATTTTTTTGTATTTA
Done.