Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00335.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3120
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.34


Found at i:1712 original size:2 final size:2

Alignment explanation


    Indices: 1705--1733  Score: 58
    Period size: 2  Copynumber: 14.5  Consensus size: 2

       1695 CTGATGTAAC

                                                       
       1705 CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
          1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT C

       1734 AGACACACAC


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   27  1.00

ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48


Consensus pattern (2 bp):   
CT

Done.