Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00335.C1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2108
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.33


Found at i:1698 original size:13 final size:13

Alignment explanation


    Indices: 1680--1711  Score: 64
    Period size: 13  Copynumber: 2.5  Consensus size: 13

       1670 AAGTTTAGTT

                         
       1680 TTAATTAATGATG
          1 TTAATTAATGATG

                         
       1693 TTAATTAATGATG
          1 TTAATTAATGATG

                  
       1706 TTAATT
          1 TTAATT

       1712 TGTCAGGTTC


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   19  1.00

ACGTcount: A:0.38, C:0.00, G:0.12, T:0.50


Consensus pattern (13 bp):   
TTAATTAATGATG
Done.