Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00335.F9

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3197
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.35


Found at i:810 original size:2 final size:2

Alignment explanation


    Indices: 803--831  Score: 58
    Period size: 2  Copynumber: 14.5  Consensus size: 2

        793 CTGATGTAAC

                                                       
        803 CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
          1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT C

        832 AGACACACAC


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   27  1.00

ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48


Consensus pattern (2 bp):   
CT

Found at i:2787 original size:13 final size:13

Alignment explanation


    Indices: 2769--2800  Score: 64
    Period size: 13  Copynumber: 2.5  Consensus size: 13

       2759 AAGTTTAGTT

                         
       2769 TTAATTAATGATG
          1 TTAATTAATGATG

                         
       2782 TTAATTAATGATG
          1 TTAATTAATGATG

                  
       2795 TTAATT
          1 TTAATT

       2801 TGTCAGGTTC


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   19  1.00

ACGTcount: A:0.38, C:0.00, G:0.12, T:0.50


Consensus pattern (13 bp):   
TTAATTAATGATG
Done.