Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00337.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 934

Length: 1558
ACGTcount: A:0.33, C:0.22, G:0.15, T:0.31


Found at i:1192 original size:23 final size:23

Alignment explanation


    Indices: 1166--1224  Score: 64
    Period size: 23  Copynumber: 2.6  Consensus size: 23

       1156 TACAGAACGT

                            *      
       1166 GCCACAAAGGCATCACGGAATAC
          1 GCCACAAAGGCATCACAGAATAC

                    *    * *      *
       1189 GCCACAAATGCATTATAGAATAT
          1 GCCACAAAGGCATCACAGAATAC

                *        
       1212 GCCATAAAGGCAT
          1 GCCACAAAGGCAT

       1225 AAAAAAGTTG


Statistics
Matches: 29,  Mismatches: 7, Indels: 0
        0.81            0.19        0.00

Matches are distributed among these distances:
  23   29  1.00

ACGTcount: A:0.41, C:0.24, G:0.19, T:0.17


Consensus pattern (23 bp):   
GCCACAAAGGCATCACAGAATAC
Done.