Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00340.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 406

Length: 677
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.36


Found at i:343 original size:196 final size:196

Alignment explanation


    Indices: 1--392  Score: 759
    Period size: 196  Copynumber: 2.0  Consensus size: 196

                                *                                            
          1 TCATCATCTTGCTATCATACGACTAACTCTTTGTTTCATCTCTCAATAGCTTTCATTTTCAACTA
          1 TCATCATCTTGCTATCATACAACTAACTCTTTGTTTCATCTCTCAATAGCTTTCATTTTCAACTA

                                                                             
         66 TGGCTTCTTTCGGCATGGTTTCTCTTTTTGCAGTTTTGCTTGTGGCTTTTTGTGTATCAAACTCA
         66 TGGCTTCTTTCGGCATGGTTTCTCTTTTTGCAGTTTTGCTTGTGGCTTTTTGTGTATCAAACTCA

                                                                             
        131 GAAGCATGAGCTCGTGACATAGATTGTTTGGGCCAGTGTAAACATGGTGGCTTTTGTGACATGAT
        131 GAAGCATGAGCTCGTGACATAGATTGTTTGGGCCAGTGTAAACATGGTGGCTTTTGTGACATGAT

             
        196 A
        196 A

                                                                             
        197 TCATCATCTTGCTATCATACAACTAACTCTTTGTTTCATCTCTCAATAGCTTTCATTTTCAACTA
          1 TCATCATCTTGCTATCATACAACTAACTCTTTGTTTCATCTCTCAATAGCTTTCATTTTCAACTA

                                                                             
        262 TGGCTTCTTTCGGCATGGTTTCTCTTTTTGCAGTTTTGCTTGTGGCTTTTTGTGTATCAAACTCA
         66 TGGCTTCTTTCGGCATGGTTTCTCTTTTTGCAGTTTTGCTTGTGGCTTTTTGTGTATCAAACTCA

                                                                             
        327 GAAGCATGCA-CTCGTGACATAGATTGTTTGGGCCAGTGTAAACATGGTGGCTTTTGTGACATGA
        131 GAAGCATG-AGCTCGTGACATAGATTGTTTGGGCCAGTGTAAACATGGTGGCTTTTGTGACATGA

              
        391 TA
        195 TA

        393 ACTAAAAAAT


Statistics
Matches: 194,  Mismatches: 1, Indels: 2
        0.98            0.01        0.01

Matches are distributed among these distances:
 196  193  0.99
 197    1  0.01

ACGTcount: A:0.21, C:0.20, G:0.19, T:0.41


Consensus pattern (196 bp):   
TCATCATCTTGCTATCATACAACTAACTCTTTGTTTCATCTCTCAATAGCTTTCATTTTCAACTA
TGGCTTCTTTCGGCATGGTTTCTCTTTTTGCAGTTTTGCTTGTGGCTTTTTGTGTATCAAACTCA
GAAGCATGAGCTCGTGACATAGATTGTTTGGGCCAGTGTAAACATGGTGGCTTTTGTGACATGAT
A
Done.