Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00368.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3471
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32


Found at i:417 original size:16 final size:15

Alignment explanation


    Indices: 375--410  Score: 72
    Period size: 15  Copynumber: 2.4  Consensus size: 15

        365 TTTTTTGAAA

                           
        375 TTTTTTGTCATTATT
          1 TTTTTTGTCATTATT

                           
        390 TTTTTTGTCATTATT
          1 TTTTTTGTCATTATT

                  
        405 TTTTTT
          1 TTTTTT

        411 TTCCATTTCC


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   21  1.00

ACGTcount: A:0.11, C:0.06, G:0.06, T:0.78


Consensus pattern (15 bp):   
TTTTTTGTCATTATT

Found at i:1125 original size:24 final size:26

Alignment explanation


    Indices: 1078--1126  Score: 66
    Period size: 24  Copynumber: 2.0  Consensus size: 26

       1068 ATAATTTCTT

                             * *      
       1078 TATAATTTTTGTATTTTTAGATTTTA
          1 TATAATTTTTGTATTTTAAAATTTTA

                                     
       1104 TATAATTTTT-T-TTTTAAAATTTT
          1 TATAATTTTTGTATTTTAAAATTTT

       1127 CACCTTGATG


Statistics
Matches: 21,  Mismatches: 2, Indels: 2
        0.84            0.08        0.08

Matches are distributed among these distances:
  24   10  0.48
  25    1  0.05
  26   10  0.48

ACGTcount: A:0.29, C:0.00, G:0.04, T:0.67


Consensus pattern (26 bp):   
TATAATTTTTGTATTTTAAAATTTTA
Done.