Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00382.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4383
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.29


Found at i:4103 original size:4 final size:4

Alignment explanation


    Indices: 4087--4124  Score: 51
    Period size: 4  Copynumber: 9.5  Consensus size: 4

       4077 TAAAATTCCA

                                  *                         
       4087 ATGT ATGT AATGT ATGT AAGT ATGT ATGT ATG- ATGT AT
          1 ATGT ATGT -ATGT ATGT ATGT ATGT ATGT ATGT ATGT AT

       4125 AGGTCTCAAT


Statistics
Matches: 30,  Mismatches: 2, Indels: 4
        0.83            0.06        0.11

Matches are distributed among these distances:
   3    3  0.10
   4   23  0.77
   5    4  0.13

ACGTcount: A:0.32, C:0.00, G:0.24, T:0.45


Consensus pattern (4 bp):   
ATGT
Done.