Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00382.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4581
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.30


Found at i:415 original size:84 final size:84

Alignment explanation


    Indices: 274--430  Score: 235
    Period size: 84  Copynumber: 1.9  Consensus size: 84

        264 ATTCATTCCT

                      *         *                             *              
        274 TTTGCATTGACTTCTCAAGGTAAAAATCTGTATGTTCCTTTATTTTCTGGCATTGGGTTCCTTAG
          1 TTTGCATTGAATTCTCAAGGGAAAAATCTGTATGTTCCTTTATTTTCTGGAATTGGGTTCCTTAG

                               
        339 AATCTTGAATTTTATTCTC
         66 AATCTTGAATTTTATTCTC

                         *             *      *                              
        358 TTTGCATTGAATTTTCAAGGGAAAAA-GTGTATTTTTCCTTTATTTTCTGGAATTGGGTTCCTTA
          1 TTTGCATTGAATTCTCAAGGGAAAAATCTGTA-TGTTCCTTTATTTTCTGGAATTGGGTTCCTTA

                *    
        422 GAATTTTGA
         65 GAATCTTGA

        431 GAGAAAAACA


Statistics
Matches: 65,  Mismatches: 7, Indels: 2
        0.88            0.09        0.03

Matches are distributed among these distances:
  83    4  0.06
  84   61  0.94

ACGTcount: A:0.23, C:0.13, G:0.17, T:0.46


Consensus pattern (84 bp):   
TTTGCATTGAATTCTCAAGGGAAAAATCTGTATGTTCCTTTATTTTCTGGAATTGGGTTCCTTAG
AATCTTGAATTTTATTCTC

Found at i:4301 original size:4 final size:4

Alignment explanation


    Indices: 4285--4322  Score: 51
    Period size: 4  Copynumber: 9.5  Consensus size: 4

       4275 TAAAATTCCA

                                  *                         
       4285 ATGT ATGT AATGT ATGT AAGT ATGT ATGT ATG- ATGT AT
          1 ATGT ATGT -ATGT ATGT ATGT ATGT ATGT ATGT ATGT AT

       4323 AGGTCTCAAT


Statistics
Matches: 30,  Mismatches: 2, Indels: 4
        0.83            0.06        0.11

Matches are distributed among these distances:
   3    3  0.10
   4   23  0.77
   5    4  0.13

ACGTcount: A:0.32, C:0.00, G:0.24, T:0.45


Consensus pattern (4 bp):   
ATGT
Done.