Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00389.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1846
ACGTcount: A:0.27, C:0.18, G:0.21, T:0.34


Found at i:1718 original size:5 final size:5

Alignment explanation


    Indices: 1708--1749  Score: 57
    Period size: 5  Copynumber: 8.2  Consensus size: 5

       1698 ACTGGAATTA

                                       *     *                
       1708 TGTTT TGTTT TGTTT TGTTT TGTCT TGTCT TGTTTT TGTTT T
          1 TGTTT TGTTT TGTTT TGTTT TGTTT TGTTT TG-TTT TGTTT T

       1750 TAATAATATT


Statistics
Matches: 34,  Mismatches: 2, Indels: 2
        0.89            0.05        0.05

Matches are distributed among these distances:
   5   30  0.88
   6    4  0.12

ACGTcount: A:0.00, C:0.05, G:0.19, T:0.76


Consensus pattern (5 bp):   
TGTTT

Done.