Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00398.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2193
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27


Found at i:1275 original size:24 final size:24

Alignment explanation


    Indices: 1209--1275  Score: 71
    Period size: 24  Copynumber: 2.8  Consensus size: 24

       1199 ACAACCTGTG

                            * *    *
       1209 TTAGCACAAGCACCGCAATCATTG
          1 TTAGCACAAGCACCGCCACCATTA

             **         *           
       1233 TCGGCACAAGCAGCGCCACCATTA
          1 TTAGCACAAGCACCGCCACCATTA

                          *    
       1257 TTAGCACAAGCACCACCAC
          1 TTAGCACAAGCACCGCCAC

       1276 AACCATCAAA


Statistics
Matches: 33,  Mismatches: 10, Indels: 0
        0.77            0.23        0.00

Matches are distributed among these distances:
  24   33  1.00

ACGTcount: A:0.33, C:0.36, G:0.16, T:0.15


Consensus pattern (24 bp):   
TTAGCACAAGCACCGCCACCATTA

Found at i:1411 original size:6 final size:6

Alignment explanation


    Indices: 1394--1425  Score: 55
    Period size: 6  Copynumber: 5.3  Consensus size: 6

       1384 GAGGCCGTGA

                    *                            
       1394 AAGAGG ACGAGG AAGAGG AAGAGG AAGAGG AA
          1 AAGAGG AAGAGG AAGAGG AAGAGG AAGAGG AA

       1426 ATGAGATTTC


Statistics
Matches: 24,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
   6   24  1.00

ACGTcount: A:0.50, C:0.03, G:0.47, T:0.00


Consensus pattern (6 bp):   
AAGAGG
Done.