Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00419.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1948
ACGTcount: A:0.25, C:0.23, G:0.20, T:0.32


Found at i:105 original size:6 final size:7

Alignment explanation


    Indices: 80--112  Score: 50
    Period size: 7  Copynumber: 4.7  Consensus size: 7

         70 CCAGCTCTAA

                   
         80 CCCTCTC
          1 CCCTCTC

                   
         87 CCCTCTC
          1 CCCTCTC

                   
         94 CCCTCT-
          1 CCCTCTC

                    
        100 CCCTCTTC
          1 CCCTC-TC

                 
        108 CCCTC
          1 CCCTC

        113 CATAGCTCAA


Statistics
Matches: 24,  Mismatches: 0, Indels: 3
        0.89            0.00        0.11

Matches are distributed among these distances:
   6    5  0.21
   7   14  0.58
   8    5  0.21

ACGTcount: A:0.00, C:0.70, G:0.00, T:0.30


Consensus pattern (7 bp):   
CCCTCTC
Done.