Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00422.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2996
ACGTcount: A:0.29, C:0.14, G:0.17, T:0.40


Found at i:79 original size:33 final size:33

Alignment explanation


    Indices: 37--101  Score: 121
    Period size: 33  Copynumber: 2.0  Consensus size: 33

         27 ACTTTACCCT

                                             
         37 TCCATTTCTTTCTCACGTCTGGACCTTTCTTCA
          1 TCCATTTCTTTCTCACGTCTGGACCTTTCTTCA

                                   *        
         70 TCCATTTCTTTCTCACGTCTGGAGCTTTCTTC
          1 TCCATTTCTTTCTCACGTCTGGACCTTTCTTC

        102 TTTCCTTCAT


Statistics
Matches: 31,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  33   31  1.00

ACGTcount: A:0.11, C:0.32, G:0.11, T:0.46


Consensus pattern (33 bp):   
TCCATTTCTTTCTCACGTCTGGACCTTTCTTCA
Done.