Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00423.P5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1930
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.35


Found at i:1862 original size:16 final size:16

Alignment explanation


    Indices: 1811--1856  Score: 65
    Period size: 16  Copynumber: 2.9  Consensus size: 16

       1801 CAATAATGCT

                   * *      
       1811 ATTACAGCTCTATTCC
          1 ATTACAGTTATATTCC

                     *      
       1827 ATTACAGTTTTATTCC
          1 ATTACAGTTATATTCC

                          
       1843 ATTACAGTTATATT
          1 ATTACAGTTATATT

       1857 TTATTATAAT


Statistics
Matches: 27,  Mismatches: 3, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  16   27  1.00

ACGTcount: A:0.28, C:0.20, G:0.07, T:0.46


Consensus pattern (16 bp):   
ATTACAGTTATATTCC
Done.