Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00437.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 785

Length: 1309
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.33


Found at i:84 original size:2 final size:2

Alignment explanation


    Indices: 77--112  Score: 63
    Period size: 2  Copynumber: 18.0  Consensus size: 2

         67 ATACATGTAT

                                       *                         
         77 TC TC TC TC TC TC TC TC TC GC TC TC TC TC TC TC TC TC
          1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC

        113 GATTGATTTT


Statistics
Matches: 32,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
   2   32  1.00

ACGTcount: A:0.00, C:0.50, G:0.03, T:0.47


Consensus pattern (2 bp):   
TC

Done.