Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00448.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 841

Length: 1403
ACGTcount: A:0.42, C:0.13, G:0.16, T:0.29


Found at i:485 original size:22 final size:22

Alignment explanation


    Indices: 439--480  Score: 61
    Period size: 20  Copynumber: 2.0  Consensus size: 22

        429 CTAAAGTATA

                         *        
        439 AAATTATATAAGAGAAATCAAT
          1 AAATTATATAAGACAAATCAAT

                                  
        461 AAATTATAT-A-ACAAATCAAT
          1 AAATTATATAAGACAAATCAAT

        481 GTAAAAATAT


Statistics
Matches: 19,  Mismatches: 1, Indels: 2
        0.86            0.05        0.09

Matches are distributed among these distances:
  20    9  0.47
  21    1  0.05
  22    9  0.47

ACGTcount: A:0.60, C:0.07, G:0.05, T:0.29


Consensus pattern (22 bp):   
AAATTATATAAGACAAATCAAT
Done.