Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga08g00457.N11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2047
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.31
Found at i:1114 original size:24 final size:24
Alignment explanation
Indices: 1087--1134 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
1077 CTGTTGACTT
1087 ACAGTCTTTTAGTTAAGTTGTTTC
1 ACAGTCTTTTAGTTAAGTTGTTTC
1111 ACAGTCTTTTAGTTAAGTTGTTTC
1 ACAGTCTTTTAGTTAAGTTGTTTC
1135 CCAAGAATTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.21, C:0.12, G:0.17, T:0.50
Consensus pattern (24 bp):
ACAGTCTTTTAGTTAAGTTGTTTC
Found at i:1165 original size:81 final size:81
Alignment explanation
Indices: 1030--1191 Score: 324
Period size: 81 Copynumber: 2.0 Consensus size: 81
1020 CTGTTGACTT
1030 ACAGTCTTTTAGTTAAGTTGTTTCCCAAGAATTGAAAAGTAATGAGACTGTTGACTTACAGTCTT
1 ACAGTCTTTTAGTTAAGTTGTTTCCCAAGAATTGAAAAGTAATGAGACTGTTGACTTACAGTCTT
1095 TTAGTTAAGTTGTTTC
66 TTAGTTAAGTTGTTTC
1111 ACAGTCTTTTAGTTAAGTTGTTTCCCAAGAATTGAAAAGTAATGAGACTGTTGACTTACAGTCTT
1 ACAGTCTTTTAGTTAAGTTGTTTCCCAAGAATTGAAAAGTAATGAGACTGTTGACTTACAGTCTT
1176 TTAGTTAAGTTGTTTC
66 TTAGTTAAGTTGTTTC
1192 CCAAGAATTG
Statistics
Matches: 81, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
81 81 1.00
ACGTcount: A:0.28, C:0.12, G:0.19, T:0.41
Consensus pattern (81 bp):
ACAGTCTTTTAGTTAAGTTGTTTCCCAAGAATTGAAAAGTAATGAGACTGTTGACTTACAGTCTT
TTAGTTAAGTTGTTTC
Done.