Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga08g00457.N12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2675
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.32
Found at i:1742 original size:24 final size:24
Alignment explanation
Indices: 1715--1762 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
1705 CTGTTGACTT
1715 ACAGTCTTTTAGTTAAGTTGTTTC
1 ACAGTCTTTTAGTTAAGTTGTTTC
1739 ACAGTCTTTTAGTTAAGTTGTTTC
1 ACAGTCTTTTAGTTAAGTTGTTTC
1763 CCAAGAATTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.21, C:0.12, G:0.17, T:0.50
Consensus pattern (24 bp):
ACAGTCTTTTAGTTAAGTTGTTTC
Found at i:1793 original size:81 final size:81
Alignment explanation
Indices: 1658--1819 Score: 324
Period size: 81 Copynumber: 2.0 Consensus size: 81
1648 CTGTTGACTT
1658 ACAGTCTTTTAGTTAAGTTGTTTCCCAAGAATTGAAAAGTAATGAGACTGTTGACTTACAGTCTT
1 ACAGTCTTTTAGTTAAGTTGTTTCCCAAGAATTGAAAAGTAATGAGACTGTTGACTTACAGTCTT
1723 TTAGTTAAGTTGTTTC
66 TTAGTTAAGTTGTTTC
1739 ACAGTCTTTTAGTTAAGTTGTTTCCCAAGAATTGAAAAGTAATGAGACTGTTGACTTACAGTCTT
1 ACAGTCTTTTAGTTAAGTTGTTTCCCAAGAATTGAAAAGTAATGAGACTGTTGACTTACAGTCTT
1804 TTAGTTAAGTTGTTTC
66 TTAGTTAAGTTGTTTC
1820 CCAAGAATTG
Statistics
Matches: 81, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
81 81 1.00
ACGTcount: A:0.28, C:0.12, G:0.19, T:0.41
Consensus pattern (81 bp):
ACAGTCTTTTAGTTAAGTTGTTTCCCAAGAATTGAAAAGTAATGAGACTGTTGACTTACAGTCTT
TTAGTTAAGTTGTTTC
Done.