Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00458.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 990

Length: 1650
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.33


Found at i:1096 original size:136 final size:136

Alignment explanation


    Indices: 852--1272  Score: 752
    Period size: 136  Copynumber: 3.1  Consensus size: 136

        842 GAGTAGTCTC

                                     *                *                    * 
        852 CCCAAATGGGCTTGCATATGTTATTTATGTTGCATGTATTTTAAAATGGGCCTATGGGCCATATT
          1 CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT

                                  *                                          
        917 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTTTGGCCCAGTACCA
         66 GTTATCTGAATAAGGGGCTAAGACCCAGTTTATTGTAATCTGAAAAGGGCTTTGGCCCAGTACCA

                  
        982 CTGTTA
        131 CTGTTA

                                                                             
        988 CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
          1 CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT

                                                                             
       1053 GTTATCTGAATAAGGGGCTAAGACCCAGTTTATTGTAATCTGAAAAGGGCTTTGGCCCAGTACCA
         66 GTTATCTGAATAAGGGGCTAAGACCCAGTTTATTGTAATCTGAAAAGGGCTTTGGCCCAGTACCA

              *   
       1118 CTATTA
        131 CTGTTA

                                                                             
       1124 CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
          1 CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT

                                                    *          *       *     
       1189 GTTATCTGAATAAGGGGCTAAGACCCAGTTTATTGTAATCCGAAAAGGGCTCTGGCCCAATACCA
         66 GTTATCTGAATAAGGGGCTAAGACCCAGTTTATTGTAATCTGAAAAGGGCTTTGGCCCAGTACCA

                  
       1254 CTGTTA
        131 CTGTTA

              **         
       1260 CCTGAATGGGCTT
          1 CCCAAATGGGCTT

       1273 AGGCCCAATG


Statistics
Matches: 274,  Mismatches: 11, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
 136  274  1.00

ACGTcount: A:0.26, C:0.18, G:0.24, T:0.32


Consensus pattern (136 bp):   
CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
GTTATCTGAATAAGGGGCTAAGACCCAGTTTATTGTAATCTGAAAAGGGCTTTGGCCCAGTACCA
CTGTTA
Done.