Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00459.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 214

Length: 358
ACGTcount: A:0.18, C:0.23, G:0.27, T:0.31


Found at i:165 original size:21 final size:21

Alignment explanation


    Indices: 136--234  Score: 65
    Period size: 21  Copynumber: 4.7  Consensus size: 21

        126 ACACAGGTTG

                *                
        136 TTCATACGGGCGTGTGGGGCC
          1 TTCACACGGGCGTGTGGGGCC

                             **  
        157 TTCACACGGGCGTGT-GCCCC
          1 TTCACACGGGCGTGTGGGGCC

            *      *   **         
        177 ATCTACAAGGGTATGTGGGGCC
          1 TTC-ACACGGGCGTGTGGGGCC

                    * *     *    
        199 TTCACACGAGTGTGTGTGGCC
          1 TTCACACGGGCGTGTGGGGCC

             *    **       
        220 TCCACATAGGCGTGT
          1 TTCACACGGGCGTGT

        235 AGACCCCTAC


Statistics
Matches: 57,  Mismatches: 19, Indels: 4
        0.71            0.24        0.05

Matches are distributed among these distances:
  20    5  0.09
  21   47  0.82
  22    5  0.09

ACGTcount: A:0.15, C:0.26, G:0.34, T:0.24


Consensus pattern (21 bp):   
TTCACACGGGCGTGTGGGGCC
Done.