Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00479.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 999

Length: 1666
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31


Found at i:878 original size:136 final size:136

Alignment explanation


    Indices: 633--1190  Score: 1044
    Period size: 136  Copynumber: 4.1  Consensus size: 136

        623 GAGTAGTCTC

                            *       *                                        
        633 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
          1 CCCAAATGGGCTTGCACATG-TTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC

                                                                *          * 
        698 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTTTGGCCCAGTATC
         65 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC

                   
        763 ACTGTTA
        130 ACTGTTA

                            *                                                
        770 CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
          1 CCCAAATGGGCTTGCACATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT

                                                                             
        835 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
         66 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA

                  
        900 CTGTTA
        131 CTGTTA

                                                                             
        906 CCCAAATGGGCTTGCACATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
          1 CCCAAATGGGCTTGCACATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT

                                                                             
        971 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
         66 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA

                  
       1036 CTGTTA
        131 CTGTTA

                                                                             
       1042 CCCAAATGGGCTTGCACATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
          1 CCCAAATGGGCTTGCACATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT

                                                                             
       1107 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
         66 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA

                  
       1172 CTGTTA
        131 CTGTTA

              **         
       1178 CCTGAATGGGCTT
          1 CCCAAATGGGCTT

       1191 AGGCCCAATA


Statistics
Matches: 415,  Mismatches: 6, Indels: 1
        0.98            0.01        0.00

Matches are distributed among these distances:
 136  395  0.95
 137   20  0.05

ACGTcount: A:0.25, C:0.19, G:0.25, T:0.32


Consensus pattern (136 bp):   
CCCAAATGGGCTTGCACATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
CTGTTA

Done.