Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00481.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 331

Length: 553
ACGTcount: A:0.37, C:0.10, G:0.22, T:0.31


Found at i:339 original size:26 final size:26

Alignment explanation


    Indices: 310--419  Score: 193
    Period size: 26  Copynumber: 4.2  Consensus size: 26

        300 TGATACAAAT

                                      
        310 TGATAATGGGTTAGGTAAATGTTTCA
          1 TGATAATGGGTTAGGTAAATGTTTCA

                   *               *  
        336 TGATAATAGGTTAGGTAAATGTTCCA
          1 TGATAATGGGTTAGGTAAATGTTTCA

                                      
        362 TGATAATGGGTTAGGTAAATGTTTCA
          1 TGATAATGGGTTAGGTAAATGTTTCA

             *                        
        388 TAATAATGGGTTAGGTAAATGTTTCA
          1 TGATAATGGGTTAGGTAAATGTTTCA

                  
        414 TGATAA
          1 TGATAA

        420 GAATATCATG


Statistics
Matches: 78,  Mismatches: 6, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  26   78  1.00

ACGTcount: A:0.34, C:0.05, G:0.25, T:0.37


Consensus pattern (26 bp):   
TGATAATGGGTTAGGTAAATGTTTCA

Done.