Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00494.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4927
ACGTcount: A:0.30, C:0.10, G:0.27, T:0.33


Found at i:4373 original size:38 final size:38

Alignment explanation


    Indices: 4315--4391  Score: 136
    Period size: 38  Copynumber: 2.0  Consensus size: 38

       4305 ATCATCAAGG

                       *   *                      
       4315 TTGGATCCATTGAGGTGTTTAATTGGGTAGAAAACAAA
          1 TTGGATCCATTAAGGCGTTTAATTGGGTAGAAAACAAA

                                                  
       4353 TTGGATCCATTAAGGCGTTTAATTGGGTAGAAAACAAA
          1 TTGGATCCATTAAGGCGTTTAATTGGGTAGAAAACAAA

             
       4391 T
          1 T

       4392 GTTTGAGACC


Statistics
Matches: 37,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  38   37  1.00

ACGTcount: A:0.35, C:0.09, G:0.25, T:0.31


Consensus pattern (38 bp):   
TTGGATCCATTAAGGCGTTTAATTGGGTAGAAAACAAA
Done.