Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01812.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 664

Length: 1108
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.33


Found at i:819 original size:25 final size:25

Alignment explanation


    Indices: 785--834  Score: 100
    Period size: 25  Copynumber: 2.0  Consensus size: 25

        775 CAACTATATG

                                     
        785 AGCAGAGAAGGCATTGTTGAGATTC
          1 AGCAGAGAAGGCATTGTTGAGATTC

                                     
        810 AGCAGAGAAGGCATTGTTGAGATTC
          1 AGCAGAGAAGGCATTGTTGAGATTC

        835 GCAAACTCAA


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  25   25  1.00

ACGTcount: A:0.32, C:0.12, G:0.32, T:0.24


Consensus pattern (25 bp):   
AGCAGAGAAGGCATTGTTGAGATTC
Done.