Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01814.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2944
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.32


Found at i:82 original size:21 final size:21

Alignment explanation


    Indices: 56--97  Score: 57
    Period size: 21  Copynumber: 2.0  Consensus size: 21

         46 TCAAATTGAT

                  *              
         56 GGCAATTTGAATCCATCAAAA
          1 GGCAATATGAATCCATCAAAA

                     *    *      
         77 GGCAATATGGATCCGTCAAAA
          1 GGCAATATGAATCCATCAAAA

         98 TTTAAGCGAC


Statistics
Matches: 18,  Mismatches: 3, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  21   18  1.00

ACGTcount: A:0.40, C:0.19, G:0.19, T:0.21


Consensus pattern (21 bp):   
GGCAATATGAATCCATCAAAA
Done.