Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00518.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4060
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.29


Found at i:3628 original size:8 final size:8

Alignment explanation


    Indices: 3615--3649  Score: 52
    Period size: 8  Copynumber: 4.4  Consensus size: 8

       3605 GGCCTATATG

                    
       3615 TATATGTA
          1 TATATGTA

                    
       3623 TATATGTA
          1 TATATGTA

             *     *
       3631 TGTATGTC
          1 TATATGTA

                    
       3639 TATATGTA
          1 TATATGTA

               
       3647 TAT
          1 TAT

       3650 TGTTGAAACT


Statistics
Matches: 23,  Mismatches: 4, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
   8   23  1.00

ACGTcount: A:0.31, C:0.03, G:0.14, T:0.51


Consensus pattern (8 bp):   
TATATGTA
Done.