Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01816.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 640

Length: 1068
ACGTcount: A:0.26, C:0.14, G:0.25, T:0.36


Found at i:887 original size:14 final size:14

Alignment explanation


    Indices: 861--890  Score: 51
    Period size: 15  Copynumber: 2.1  Consensus size: 14

        851 AGGCCAGAGT

                          
        861 AGTTTTGGTTTTTG
          1 AGTTTTGGTTTTTG

                           
        875 AGTTTGTGGTTTTTG
          1 AGTTT-TGGTTTTTG

             
        890 A
          1 A

        891 AGTTCCTGTG


Statistics
Matches: 15,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  14    5  0.33
  15   10  0.67

ACGTcount: A:0.10, C:0.00, G:0.30, T:0.60


Consensus pattern (14 bp):   
AGTTTTGGTTTTTG
Done.