Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00524.R1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 856

Length: 1428
ACGTcount: A:0.29, C:0.24, G:0.25, T:0.22


Found at i:694 original size:18 final size:18

Alignment explanation


    Indices: 671--705  Score: 61
    Period size: 18  Copynumber: 1.9  Consensus size: 18

        661 AGGAGTCTCA

                       *      
        671 GGAAGAAGAAGGAGAAGG
          1 GGAAGAAGAAGAAGAAGG

                             
        689 GGAAGAAGAAGAAGAAG
          1 GGAAGAAGAAGAAGAAG

        706 ACAACCCCAG


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  18   16  1.00

ACGTcount: A:0.54, C:0.00, G:0.46, T:0.00


Consensus pattern (18 bp):   
GGAAGAAGAAGAAGAAGG
Done.