Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01816.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3413
ACGTcount: A:0.28, C:0.15, G:0.24, T:0.34


Found at i:3232 original size:14 final size:14

Alignment explanation


    Indices: 3206--3235  Score: 51
    Period size: 15  Copynumber: 2.1  Consensus size: 14

       3196 AGGCCAGAGT

                          
       3206 AGTTTTGGTTTTTG
          1 AGTTTTGGTTTTTG

                           
       3220 AGTTTGTGGTTTTTG
          1 AGTTT-TGGTTTTTG

             
       3235 A
          1 A

       3236 AGTTCCTGTG


Statistics
Matches: 15,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  14    5  0.33
  15   10  0.67

ACGTcount: A:0.10, C:0.00, G:0.30, T:0.60


Consensus pattern (14 bp):   
AGTTTTGGTTTTTG
Done.