Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00528.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2124
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30


Found at i:1210 original size:48 final size:48

Alignment explanation


    Indices: 1139--1236  Score: 196
    Period size: 48  Copynumber: 2.0  Consensus size: 48

       1129 CATATGTTCC

                                                            
       1139 ACCAGAGAACATTGAGAACATTACTTCTGCTCATGCATCACAGTATCA
          1 ACCAGAGAACATTGAGAACATTACTTCTGCTCATGCATCACAGTATCA

                                                            
       1187 ACCAGAGAACATTGAGAACATTACTTCTGCTCATGCATCACAGTATCA
          1 ACCAGAGAACATTGAGAACATTACTTCTGCTCATGCATCACAGTATCA

              
       1235 AC
          1 AC

       1237 GAAATCCTGC


Statistics
Matches: 50,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  48   50  1.00

ACGTcount: A:0.36, C:0.26, G:0.14, T:0.24


Consensus pattern (48 bp):   
ACCAGAGAACATTGAGAACATTACTTCTGCTCATGCATCACAGTATCA
Done.