Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00528.F6

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4517
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.30


Found at i:1142 original size:48 final size:48

Alignment explanation


    Indices: 1071--1168  Score: 196
    Period size: 48  Copynumber: 2.0  Consensus size: 48

       1061 CATATGTTCC

                                                            
       1071 ACCAGAGAACATTGAGAACATTACTTCTGCTCATGCATCACAGTATCA
          1 ACCAGAGAACATTGAGAACATTACTTCTGCTCATGCATCACAGTATCA

                                                            
       1119 ACCAGAGAACATTGAGAACATTACTTCTGCTCATGCATCACAGTATCA
          1 ACCAGAGAACATTGAGAACATTACTTCTGCTCATGCATCACAGTATCA

              
       1167 AC
          1 AC

       1169 GAAATCCTGC


Statistics
Matches: 50,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  48   50  1.00

ACGTcount: A:0.36, C:0.26, G:0.14, T:0.24


Consensus pattern (48 bp):   
ACCAGAGAACATTGAGAACATTACTTCTGCTCATGCATCACAGTATCA

Found at i:2632 original size:17 final size:18

Alignment explanation


    Indices: 2597--2638  Score: 68
    Period size: 18  Copynumber: 2.4  Consensus size: 18

       2587 TACCTCTTAG

                       *      
       2597 AAGTATTTTTGGGATTAA
          1 AAGTATTTTTGAGATTAA

                              
       2615 AAGTATTTTTGAGA-TAA
          1 AAGTATTTTTGAGATTAA

                   
       2632 AAGTATT
          1 AAGTATT

       2639 GTTAAATAAG


Statistics
Matches: 23,  Mismatches: 1, Indels: 1
        0.92            0.04        0.04

Matches are distributed among these distances:
  17   10  0.43
  18   13  0.57

ACGTcount: A:0.38, C:0.00, G:0.19, T:0.43


Consensus pattern (18 bp):   
AAGTATTTTTGAGATTAA
Done.