Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga08g00529.F10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4369
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.35
Found at i:1347 original size:18 final size:18
Alignment explanation
Indices: 1324--1360 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
1314 TTATTCTTCT
1324 TATTCGGTAACCATTGGA
1 TATTCGGTAACCATTGGA
*
1342 TATTCGGTAACTATTGGA
1 TATTCGGTAACCATTGGA
1360 T
1 T
1361 TTTCCTTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.27, C:0.14, G:0.22, T:0.38
Consensus pattern (18 bp):
TATTCGGTAACCATTGGA
Found at i:4085 original size:115 final size:115
Alignment explanation
Indices: 3883--4111 Score: 458
Period size: 115 Copynumber: 2.0 Consensus size: 115
3873 TATATATATA
3883 TAGAAACACAACCTTCTTTGCCTACATTAGACTTCTGGTCTTAATTCACTTATGTTACACTTAAT
1 TAGAAACACAACCTTCTTTGCCTACATTAGACTTCTGGTCTTAATTCACTTATGTTACACTTAAT
3948 ATTACAGGTCAGGGTCCCAGAGAGGAGTTATGAATCTCACATTGACAGTT
66 ATTACAGGTCAGGGTCCCAGAGAGGAGTTATGAATCTCACATTGACAGTT
3998 TAGAAACACAACCTTCTTTGCCTACATTAGACTTCTGGTCTTAATTCACTTATGTTACACTTAAT
1 TAGAAACACAACCTTCTTTGCCTACATTAGACTTCTGGTCTTAATTCACTTATGTTACACTTAAT
4063 ATTACAGGTCAGGGTCCCAGAGAGGAGTTATGAATCTCACATTGACAGT
66 ATTACAGGTCAGGGTCCCAGAGAGGAGTTATGAATCTCACATTGACAGT
4112 GTACTAGAGT
Statistics
Matches: 114, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
115 114 1.00
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.33
Consensus pattern (115 bp):
TAGAAACACAACCTTCTTTGCCTACATTAGACTTCTGGTCTTAATTCACTTATGTTACACTTAAT
ATTACAGGTCAGGGTCCCAGAGAGGAGTTATGAATCTCACATTGACAGTT
Done.