Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00529.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1983
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.30


Found at i:1699 original size:115 final size:115

Alignment explanation


    Indices: 1497--1725  Score: 458
    Period size: 115  Copynumber: 2.0  Consensus size: 115

       1487 TATATATATA

                                                                             
       1497 TAGAAACACAACCTTCTTTGCCTACATTAGACTTCTGGTCTTAATTCACTTATGTTACACTTAAT
          1 TAGAAACACAACCTTCTTTGCCTACATTAGACTTCTGGTCTTAATTCACTTATGTTACACTTAAT

                                                              
       1562 ATTACAGGTCAGGGTCCCAGAGAGGAGTTATGAATCTCACATTGACAGTT
         66 ATTACAGGTCAGGGTCCCAGAGAGGAGTTATGAATCTCACATTGACAGTT

                                                                             
       1612 TAGAAACACAACCTTCTTTGCCTACATTAGACTTCTGGTCTTAATTCACTTATGTTACACTTAAT
          1 TAGAAACACAACCTTCTTTGCCTACATTAGACTTCTGGTCTTAATTCACTTATGTTACACTTAAT

                                                             
       1677 ATTACAGGTCAGGGTCCCAGAGAGGAGTTATGAATCTCACATTGACAGT
         66 ATTACAGGTCAGGGTCCCAGAGAGGAGTTATGAATCTCACATTGACAGT

       1726 GTACTAGAGT


Statistics
Matches: 114,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
 115  114  1.00

ACGTcount: A:0.30, C:0.21, G:0.17, T:0.33


Consensus pattern (115 bp):   
TAGAAACACAACCTTCTTTGCCTACATTAGACTTCTGGTCTTAATTCACTTATGTTACACTTAAT
ATTACAGGTCAGGGTCCCAGAGAGGAGTTATGAATCTCACATTGACAGTT
Done.