Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga08g00529.F4
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2792
ACGTcount: A:0.29, C:0.19, G:0.20, T:0.32
Found at i:1347 original size:18 final size:18
Alignment explanation
Indices: 1324--1360 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
1314 TTATTCTTCT
1324 TATTCGGTAACCATTGGA
1 TATTCGGTAACCATTGGA
*
1342 TATTCGGTAACTATTGGA
1 TATTCGGTAACCATTGGA
1360 T
1 T
1361 TTTCCTTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.27, C:0.14, G:0.22, T:0.38
Consensus pattern (18 bp):
TATTCGGTAACCATTGGA
Found at i:2508 original size:115 final size:115
Alignment explanation
Indices: 2306--2534 Score: 458
Period size: 115 Copynumber: 2.0 Consensus size: 115
2296 TATATATATA
2306 TAGAAACACAACCTTCTTTGCCTACATTAGACTTCTGGTCTTAATTCACTTATGTTACACTTAAT
1 TAGAAACACAACCTTCTTTGCCTACATTAGACTTCTGGTCTTAATTCACTTATGTTACACTTAAT
2371 ATTACAGGTCAGGGTCCCAGAGAGGAGTTATGAATCTCACATTGACAGTT
66 ATTACAGGTCAGGGTCCCAGAGAGGAGTTATGAATCTCACATTGACAGTT
2421 TAGAAACACAACCTTCTTTGCCTACATTAGACTTCTGGTCTTAATTCACTTATGTTACACTTAAT
1 TAGAAACACAACCTTCTTTGCCTACATTAGACTTCTGGTCTTAATTCACTTATGTTACACTTAAT
2486 ATTACAGGTCAGGGTCCCAGAGAGGAGTTATGAATCTCACATTGACAGT
66 ATTACAGGTCAGGGTCCCAGAGAGGAGTTATGAATCTCACATTGACAGT
2535 GTACTAGAGT
Statistics
Matches: 114, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
115 114 1.00
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.33
Consensus pattern (115 bp):
TAGAAACACAACCTTCTTTGCCTACATTAGACTTCTGGTCTTAATTCACTTATGTTACACTTAAT
ATTACAGGTCAGGGTCCCAGAGAGGAGTTATGAATCTCACATTGACAGTT
Done.