Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga08g00529.F5
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4380
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.35
Found at i:1473 original size:18 final size:18
Alignment explanation
Indices: 1450--1486 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
1440 TTATTCTTCT
1450 TATTCGGTAACCATTGGA
1 TATTCGGTAACCATTGGA
*
1468 TATTCGGTAACTATTGGA
1 TATTCGGTAACCATTGGA
1486 T
1 T
1487 TTTCCTTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.27, C:0.14, G:0.22, T:0.38
Consensus pattern (18 bp):
TATTCGGTAACCATTGGA
Found at i:4096 original size:115 final size:115
Alignment explanation
Indices: 3894--4122 Score: 458
Period size: 115 Copynumber: 2.0 Consensus size: 115
3884 TATATATATA
3894 TAGAAACACAACCTTCTTTGCCTACATTAGACTTCTGGTCTTAATTCACTTATGTTACACTTAAT
1 TAGAAACACAACCTTCTTTGCCTACATTAGACTTCTGGTCTTAATTCACTTATGTTACACTTAAT
3959 ATTACAGGTCAGGGTCCCAGAGAGGAGTTATGAATCTCACATTGACAGTT
66 ATTACAGGTCAGGGTCCCAGAGAGGAGTTATGAATCTCACATTGACAGTT
4009 TAGAAACACAACCTTCTTTGCCTACATTAGACTTCTGGTCTTAATTCACTTATGTTACACTTAAT
1 TAGAAACACAACCTTCTTTGCCTACATTAGACTTCTGGTCTTAATTCACTTATGTTACACTTAAT
4074 ATTACAGGTCAGGGTCCCAGAGAGGAGTTATGAATCTCACATTGACAGT
66 ATTACAGGTCAGGGTCCCAGAGAGGAGTTATGAATCTCACATTGACAGT
4123 GTACTAGAGT
Statistics
Matches: 114, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
115 114 1.00
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.33
Consensus pattern (115 bp):
TAGAAACACAACCTTCTTTGCCTACATTAGACTTCTGGTCTTAATTCACTTATGTTACACTTAAT
ATTACAGGTCAGGGTCCCAGAGAGGAGTTATGAATCTCACATTGACAGTT
Done.