Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00529.F9

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2453
ACGTcount: A:0.28, C:0.19, G:0.20, T:0.33


Found at i:977 original size:18 final size:18

Alignment explanation


    Indices: 954--990  Score: 65
    Period size: 18  Copynumber: 2.1  Consensus size: 18

        944 TTATTCTTCT

                              
        954 TATTCGGTAACCATTGGA
          1 TATTCGGTAACCATTGGA

                       *      
        972 TATTCGGTAACTATTGGA
          1 TATTCGGTAACCATTGGA

             
        990 T
          1 T

        991 TTTCCTTATT


Statistics
Matches: 18,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  18   18  1.00

ACGTcount: A:0.27, C:0.14, G:0.22, T:0.38


Consensus pattern (18 bp):   
TATTCGGTAACCATTGGA
Done.