Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00530.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 351

Length: 585
ACGTcount: A:0.29, C:0.23, G:0.24, T:0.24


Found at i:16 original size:2 final size:2

Alignment explanation


    Indices: 10--46  Score: 74
    Period size: 2  Copynumber: 18.5  Consensus size: 2

          1 CGGTTTAGC

                                                                   
         10 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
          1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A

         47 TGGGTAGCTG


Statistics
Matches: 35,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   35  1.00

ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00


Consensus pattern (2 bp):   
AG

Found at i:235 original size:12 final size:13

Alignment explanation


    Indices: 220--248  Score: 51
    Period size: 12  Copynumber: 2.3  Consensus size: 13

        210 GGAGGCTTCG

                         
        220 CCACCAGCA-CCA
          1 CCACCAGCAGCCA

                         
        232 CCACCAGCAGCCA
          1 CCACCAGCAGCCA

                
        245 CCAC
          1 CCAC

        249 TGCGCCACCA


Statistics
Matches: 16,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  12    9  0.56
  13    7  0.44

ACGTcount: A:0.31, C:0.59, G:0.10, T:0.00


Consensus pattern (13 bp):   
CCACCAGCAGCCA
Done.