Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00533.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2916
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31


Found at i:2281 original size:14 final size:14

Alignment explanation


    Indices: 2255--2287  Score: 50
    Period size: 14  Copynumber: 2.4  Consensus size: 14

       2245 CTCAAAGGTT

                     *    
       2255 AAAAA-AAATAAAG
          1 AAAAAGAAAAAAAG

                          
       2268 AAAAAGAAAAAAAG
          1 AAAAAGAAAAAAAG

                  
       2282 AAAAAG
          1 AAAAAG

       2288 CCCTTTATTT


Statistics
Matches: 18,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  13    5  0.28
  14   13  0.72

ACGTcount: A:0.85, C:0.00, G:0.12, T:0.03


Consensus pattern (14 bp):   
AAAAAGAAAAAAAG
Done.