Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga08g00542.F4
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2514
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Found at i:607 original size:160 final size:160
Alignment explanation
Indices: 343--662 Score: 622
Period size: 160 Copynumber: 2.0 Consensus size: 160
333 TCGCCCTGAA
343 GAAGATGGCGGCATGAGTATCACAACAACCATGCAAGTAAGTTCTCTATGCCTGTCCCTTTCACA
1 GAAGATGGCGGCATGAGTATCACAACAACCATGCAAGTAAGTTCTCTATGCCTGTCCCTTTCACA
* *
408 CAGGGGTTTGGCTTGGGTCAGACTTTTTAAATGAGGGCCTATGTTGTACTTGTACCATCATGTTC
66 CACGGGTTTGGCTTGGGTCAGACTTTTTAAATGAGGGCCTATGTTGTACGTGTACCATCATGTTC
473 ATGCTTATTTTCATTCTTTAATACAATGTT
131 ATGCTTATTTTCATTCTTTAATACAATGTT
503 GAAGATGGCGGCATGAGTATCACAACAACCATGCAAGTAAGTTCTCTATGCCTGTCCCTTTCACA
1 GAAGATGGCGGCATGAGTATCACAACAACCATGCAAGTAAGTTCTCTATGCCTGTCCCTTTCACA
568 CACGGGTTTGGCTTGGGTCAGACTTTTTAAATGAGGGCCTATGTTGTACGTGTACCATCATGTTC
66 CACGGGTTTGGCTTGGGTCAGACTTTTTAAATGAGGGCCTATGTTGTACGTGTACCATCATGTTC
633 ATGCTTATTTTCATTCTTTAATACAATGTT
131 ATGCTTATTTTCATTCTTTAATACAATGTT
663 TGTATTGGAA
Statistics
Matches: 158, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
160 158 1.00
ACGTcount: A:0.24, C:0.20, G:0.21, T:0.35
Consensus pattern (160 bp):
GAAGATGGCGGCATGAGTATCACAACAACCATGCAAGTAAGTTCTCTATGCCTGTCCCTTTCACA
CACGGGTTTGGCTTGGGTCAGACTTTTTAAATGAGGGCCTATGTTGTACGTGTACCATCATGTTC
ATGCTTATTTTCATTCTTTAATACAATGTT
Done.