Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00543.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 574

Length: 957
ACGTcount: A:0.24, C:0.22, G:0.18, T:0.35


Found at i:209 original size:73 final size:72

Alignment explanation


    Indices: 54--215  Score: 234
    Period size: 73  Copynumber: 2.2  Consensus size: 72

         44 ATCTATACCC

                 *                *                               *          
         54 TTCTCGCTCTTTTTCATTCTCATGTCTGAAGCATCTTCTTATTTTCATTCTTCTTCCCATTTCCT
          1 TTCTCCCTCTTTTTCATTCTCACGTCTGAAGCATCTTCTTATTTTCATTCTTCTACCCATTTCCT

                  *
        119 TCCAACC
         66 TCCAACA

                 *            *                      *                *      
        126 TTCTCTCTCTTTTTCATTTTCACGTCTGAAGCATCTTCTTTTTTTTCATTCTTCTACCTATTTCC
          1 TTCTCCCTCTTTTTCATTCTCACGTCTGAAGCATCTTC-TTATTTTCATTCTTCTACCCATTTCC

               *    
        191 TTCTAACA
         65 TTCCAACA

                             
        199 TTCTCCCTCTTTTTCAT
          1 TTCTCCCTCTTTTTCAT

        216 GCTTCTATCC


Statistics
Matches: 80,  Mismatches: 9, Indels: 1
        0.89            0.10        0.01

Matches are distributed among these distances:
  72   35  0.44
  73   45  0.56

ACGTcount: A:0.14, C:0.30, G:0.04, T:0.52


Consensus pattern (72 bp):   
TTCTCCCTCTTTTTCATTCTCACGTCTGAAGCATCTTCTTATTTTCATTCTTCTACCCATTTCCT
TCCAACA
Done.